XXXV Reunião Anual da SBBqResumoID:8735


Peptide Derivatives of CcdB Protein as Inhibitors of DNA Gyrase

Camila Ap. Cotrim; Eliane Trovatti; Saulo S. Garrido; Daniele C. Carvalho; Reinaldo Marchetto



UNESP- Departamento de Bioquímica e Tecnologia Química - Instituto de Química - Araraquara - São Paulo


The bactericidal toxin CcdB is encoded by the F plasmid ccd (control of cell division) locus, as part of a two-component system of the programmed cell death in Escherichia coli. CcdB acts as a toxin and CcdA as the antidote. In the absence of CcdA, CcdB can kill bacteria by a mechanism that involves DNA gyrase. DNA gyrase is a bacterial type II topoisomerase involved in DNA replication and transcription. The enzyme consists of two subunits, A (GyrA) and B (GyrB), whose active form is A2B2. CcdB blocks the gyrase activity by stabilization of a "cleavable complex" through a mechanism still unclear which the Arg462 residue of GyrA and the C-terminal fragment of CcdB toxin (Trp99 – Ile101) seem to be involved. As an approach to this mechanism as well as the development of a new family of inhibitors of DNA gyrase, we have synthesized a series of peptide fragments containing specific sequences of the natural CcdB protein. Previous results of supercoiling assays selected CcdB2 peptide as a potential inhibitor of Gyrase activity (MIC = 96 µg mL-1). CcdB2 encapsulated in Liposome (SUV) was able to inhibit the bacterial growth in liquid culture medium. The growth inhibition in vitro was about 50% for Pseudomonas sp, Streptococcus agalactae, Salmonella sp. and Klebsiella pneumoniae, and about 30% for Escherichia coli K-12, Sthaphilococcus aureus and Shigella sp.

The CcdB2 (4.8 kDa) was built using three fragments of natural CcdB including the important sequence for recognition of CcdA (residues Arg40 to Leu50). In this regard, the interaction of CcdB2 and CcdA41 (CcdA analogous of 41 amino acids residues which maintain the antidote activity) was also analyzed. Fluorescence and affinity chromatography assays revealed a considerable interaction among the two peptide sequences indicating that the CcdB2 structure maintain the special and desirable characteristics of the natural CcdB toxin. Therefore, the antimicrobial activity and the peculiar primary structure makes of the CcdB2 a good start point for the development of the new powerful and specific family of peptide antibiotics inhibitors of DNA gyrase.