Chemical and Structural Analysis of an Exopolysaccharide Produced by the Diazothropic Bacterium Herbaspirillum rubrisubalbicans
Eduardo B. Sydney; Rodrigo V. Serrato; Leonardo M. Cruz; Philip A. J. Gorin; Marcello Iacomini; Guilherme L. Sassaki
Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Paraná, CP 19046, CEP 81531-990, Curitiba-PR, Brasil.
The endophytic nitrogen-fixing bacterium Herbaspirillum rubrisubalbicans, strain AB7, was grown in synthetic liquid medium, containing mannitol and glutamate as carbon and nitrogen sources respectively, at 30oC under agitation (120 rpm) until its late exponential phase (72 h). After cell removal by centrifugation the medium was concentrated and precipitated with 3 volumes of cold ethanol (-20oC). The resulting precipitated was recovered by centrifugation, resolubilized and dialyzed against distilled water in a 6 kDa MWCO membrane for 48 h. The material retained inside the membrane was then freeze-dried to yield the EPS. A portion of the EPS was submitted to partial hydrolysis with 2M TFA at 100oC for 30 min. After the acid had been removed, the material was solubilized in water and precipitated with cold acetone (3 v/v), to yield a low molecular weight-containing supernatant (EPS-ac) and a precipitate that was recovered by centrifugation. The latter was then resolubilized in water and precipitated with cold ethanol (3 v/v), which gave a soluble fraction (EPS-et) and a precipitate that was recovered by centrifugation and solubilized in water (EPS-ws). These three fractions were submitted to TLC analysis, revealing that the water soluble fraction (EPS-sw) was formed only by high molecular weight molecules, and both EPS-ac and EPS-et contained low molecular weight carbohydrates. The fractions were then submitted to analysis in GC-MS showing the presence mainly of Rhamnose, Allose, Galactose and Glucose, as their alditol acetate derivatives, with different molar ratios within each fraction. 13C-NMR analysis of EPS-ws showed four signals in the anomeric region arising at d 94.9, 100.0, 101.1 and 103.6. The deoxy C-6 signal of rhamnosyl units was found at d 16.8 and acetyl substituents were evidenced by the signals found at d 20.5 (-CH3) and d 173.6 (C=O). DEPT experiment showed that hexoses were not glycosidicaly substituted at C-6 once all inverted signals were fount between 60.0 and 61.5 ppm. Partially methylated alditol acetates (PMAAs) derivatives of EPS-ws were analyzed by GC-MS and showed di- and tri-O-methyl hexose derivatives together with 3-O-Me- and 2-,3-O-Me2-rhamnosyl units. HMQC, COSY and TOCSY analyses were also performed for EPS-ws and assignments of several correlation signals were determined.
|