Population Variability of the Human Neutrophil Proteome
Garcia, C. H. S.1; Passos, P. I. B.1; Aquino, E. N. 1; Teles, L. M. B.1; Castro, M. S.1; Fontes, B.2; Valle, M. S.1; Fontes, W.1;
Centro Brasileiro de Pesquisas em Proteínas, CEL, IB, Universidade de Brasília – UnB Laboratório de Investigação Médica (LIM-62) – HC-FMUSP - SP
Neutrophils
are the most abundant leukocytes of human blood. Upon activation,
neutrophils are highly effective at generating reactive oxygen species
(ROS) by a process known as respiratory burst, providing rapid defense
against invading pathogens. They may be categorized in 3 distinct
states of activation according to their metabolic condition: naive,
primed and activated. The
generation of a human neutrophil proteomic map is highly desirable in
order to compare protein expression and PTMs (post-translational
modifications) among different conditions. For these proteins to be
considered as candidates for drug targets or diagnostic molecular
markers, the population variability must be considered. In
the present study, the neutrophil proteomic map of 14 healthy
individuals was compared to estimate the protein variability amongst
samples. Computational analysis was performed on the previously
obtained gel images, using the software ImageMaster Platinum and statistical tools. Data covered in 14 matched gels in this experiment reveals, until the present moment, a matching efficiency
around 60%. The number of matched spots increase inversely proportional
to the number of gels, and its distribution curve behavior, which
resembles the exponential distribution, represents the global
efficiency. Matches were distributed in homogeneous classes, suggesting a Gaussian Distribution plot, that
represents the abundance of matches per number of gels. Six classes of
match groups were represented: 7.46% (2 and 3 gels), 20.1% (4 and 5
gels), 22.25% (6, 7 and 8 gels), 19.22% (9 and 10), 17.95% (11 and 12
gels) and 13.02% (13 and 14 gels). The
standard deviation (SD) of volume percentage is a good measure of data
spread, representing protein variability. Standard deviation percentage
(SD%) data report the volume behavior related to protein abundance. In
our study, more than 85% of the match groups have low SD and SD%
analysis indicates a restrict range of classes to encompass the
majority of groups, indicating the range and abundance of possible
targets of resting human neutrophil proteomic map.
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