Structural analysis of TIM active site loop in the presence of DMSO
V. Baldim; R. Aparicio
Instituto de Química, Universidade Estadual de Campinas, CP 6154, CEP 13083-970, Campinas - SP, Brazil.
Triosephosphate isomerase (TIM, EC 5.3.1.1) catalyzes the
interconversion of glyceraldehyde-3-phosphate and dihydroxyacetone
phosphate, the fifth reaction of the glycolytic pathway. Its active
site loop exhibits a hinged-lid motion, alternating between the two
well-defined "open" and "closed" conformations. In a previous work,
three crystallographic structures of apo rabbit muscle TIM (a dimer of
identical subunits, 2 x 26.6 kDa) were determined either in the
presence or absence of DMSO. In the former situation, the active site
loop in one of the subunits was in the closed conformation, a
surprising finding as this conformation is usually observed only in
complexes with substrate analogues (Aparicio et al., 2003, J. Mol.
Biol. 334:1023-41). Intriguingly, removal of DMSO from the
crystallization conditions resulted in a crystal in which the active
site loop was in the open conformation in all the subunits of the
crystal ASU. No DMSO molecules were observed near the lid of the closed
loop or at the active site. However, DMSO is able to modify solvent
properties and could be related to the loop movement and its
stabilization in the closed conformation. In this work, we present a
new structure of apo rabbit TIM, determined in the same crystal form as
before, from crystals grown in the presence of DMSO. Preliminary
results indicated that, in this new structure, the active site loop is
in the open conformation in all the subunits, suggesting that the loop
closure is not connected to the presence of DMSO. Further refinement
and structural analysis are currently in progress.
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